Journal of Pathology Informatics Journal of Pathology Informatics
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Original Article: A quantitative approach to evaluate image quality of whole slide imaging scanners
Prarthana Shrestha, R Kneepkens, J Vrijnsen, D Vossen, E Abels, B Hulsken
J Pathol Inform 2016, 7:56 (30 December 2016)
DOI:10.4103/2153-3539.197205  
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Technical Note: Software: Generating unique IDs from patient identification data using security models
Emad A Mohammed, Jonathan C Slack, Christopher T Naugler
J Pathol Inform 2016, 7:55 (30 December 2016)
DOI:10.4103/2153-3539.197203  
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Original Article: Reporting Gleason grade/score in synoptic reports of radical prostatectomies
Andrew A Renshaw, Mercy Mena-Allauca, Edwin W Gould
J Pathol Inform 2016, 7:54 (30 December 2016)
DOI:10.4103/2153-3539.197201  
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Technical Note: Use of application containers and workflows for genomic data analysis
Wade L Schulz, Thomas Durant, Alexa J Siddon, Richard Torres
J Pathol Inform 2016, 7:53 (30 December 2016)
DOI:10.4103/2153-3539.197197  
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Book Review: Review of "Digital Pathology Resource Guide, Version 6.0 Issue No. 1, 2016" by College of American Pathologists Digital Pathology Committee
Julie Diane Gibbs, Marilyn M Bui
J Pathol Inform 2016, 7:52 (30 December 2016)
DOI:10.4103/2153-3539.197196  
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Original Research: Enhancements in localized classification for uterine cervical cancer digital histology image assessment
Peng Guo, Haidar Almubarak, Koyel Banerjee, R Joe Stanley, Rodney Long, Sameer Antani, George Thoma, Rosemary Zuna, Shelliane R Frazier, Randy H Moss, William V Stoecker
J Pathol Inform 2016, 7:51 (30 December 2016)
DOI:10.4103/2153-3539.197193  
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Original Article: How to interpret the results of medical time series data analysis: Classical statistical approaches versus dynamic Bayesian network modeling
Agnieszka Onisko, Marek J Druzdzel, R Marshall Austin
J Pathol Inform 2016, 7:50 (30 December 2016)
DOI:10.4103/2153-3539.197191  
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Original Article: A multisite validation of whole slide imaging for primary diagnosis using standardized data collection and analysis
Katy Wack, Laura Drogowski, Murray Treloar, Andrew Evans, Jonhan Ho, Anil Parwani, Michael C Montalto
J Pathol Inform 2016, 7:49 (29 November 2016)
DOI:10.4103/2153-3539.194841  PMID:27994941
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Original Research Article: Reflex test reminders in required cancer synoptic templates decrease order entry error: An analysis of mismatch repair immunohistochemical orders to screen for Lynch syndrome
Mark R Kilgore, Carrie A McIlwain, Rodney A Schmidt, Barbara M Norquist, Elizabeth M Swisher, Rochelle L Garcia, Mara H Rendi
J Pathol Inform 2016, 7:48 (29 November 2016)
DOI:10.4103/2153-3539.194840  PMID:27994940
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Original Article: Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers
Daniel M Spagnolo, Rekha Gyanchandani, Yousef Al-Kofahi, Andrew M Stern, Timothy R Lezon, Albert Gough, Dan E Meyer, Fiona Ginty, Brion Sarachan, Jeffrey Fine, Adrian V Lee, D Lansing Taylor, S Chakra Chennubhotla
J Pathol Inform 2016, 7:47 (29 November 2016)
DOI:10.4103/2153-3539.194839  PMID:27994939
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Original Article: The utility of including pathology reports in improving the computational identification of patients
Wei Chen, Yungui Huang, Brendan Boyle, Simon Lin
J Pathol Inform 2016, 7:46 (29 November 2016)
DOI:10.4103/2153-3539.194838  PMID:27994938
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Technical Note: The growing need for microservices in bioinformatics
Christopher L Williams, Jeffrey C Sica, Robert T Killen, Ulysses G. J. Balis
J Pathol Inform 2016, 7:45 (29 November 2016)
DOI:10.4103/2153-3539.194835  PMID:27994937
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Technical Note: Pathology report data extraction from relational database using R, with extraction from reports on melanoma of skin as an example
Jay J Ye
J Pathol Inform 2016, 7:44 (21 October 2016)
DOI:10.4103/2153-3539.192822  PMID:28066684
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Review Article: Computer-based image analysis in breast pathology
Ziba Gandomkar, Patrick C Brennan, Claudia Mello-Thoms
J Pathol Inform 2016, 7:43 (21 October 2016)
DOI:10.4103/2153-3539.192814  PMID:28066683
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Original Article: Detecting and segmenting cell nuclei in two-dimensional microscopy images
Chi Liu, Fei Shang, John A Ozolek, Gustavo K Rohde
J Pathol Inform 2016, 7:42 (21 October 2016)
DOI:10.4103/2153-3539.192810  PMID:28066682
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Erratum: Erratum: Antibody supervised deep learning for quantification of tumor infiltrating immune cells in hematoxylin and eosin stained breast cancer samples

J Pathol Inform 2016, 7:41 (28 September 2016)
DOI:10.4103/2153-3539.191031  PMID:27761297
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Original Article: Rates of provision of clinical information in the skin biopsy requisition form and corresponding encounter visit note
Meredith A Olson, Christine M Lohse, Nneka I Comfere
J Pathol Inform 2016, 7:40 (1 September 2016)
DOI:10.4103/2153-3539.189705  PMID:27688931
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Letter to Editor: A novel leadership fellowship in digital pathology
Bethany Jill Williams, Darren Treanor
J Pathol Inform 2016, 7:39 (1 September 2016)
DOI:10.4103/2153-3539.189704  PMID:27688930
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Research Article: Antibody-supervised deep learning for quantification of tumor-infiltrating immune cells in hematoxylin and eosin stained breast cancer samples
Riku Turkki, Nina Linder, Panu E Kovanen, Teijo Pellinen, Johan Lundin
J Pathol Inform 2016, 7:38 (1 September 2016)
DOI:10.4103/2153-3539.189703  PMID:27688929
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Technical Note: Experience of maintaining laboratory educational website's sustainability
Izak B Dimenstein
J Pathol Inform 2016, 7:37 (1 September 2016)
DOI:10.4103/2153-3539.189702  PMID:27688928
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Technical Note: A novel method for morphological pleomorphism and heterogeneity quantitative measurement: Named cell feature level co-occurrence matrix
Akira Saito, Yasushi Numata, Takuya Hamada, Tomoyoshi Horisawa, Eric Cosatto, Hans-Peter Graf, Masahiko Kuroda, Yoichiro Yamamoto
J Pathol Inform 2016, 7:36 (1 September 2016)
DOI:10.4103/2153-3539.189699  PMID:27688927
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Editorial: The coming paradigm shift: A transition from manual to automated microscopy
Navid Farahani, Corey E Monteith
J Pathol Inform 2016, 7:35 (1 September 2016)
DOI:10.4103/2153-3539.189698  PMID:27688926
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Book Review: Book review on "digital pathology": Historical perspectives, current concepts, & future applications
Paul J van Diest
J Pathol Inform 2016, 7:34 (23 August 2016)
DOI:10.4103/2153-3539.188944  
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Abstracts: Pathology Informatics Summit 2016
Jeremy Molligan, Robert Stapp, Miraj Patel, Jack London, Chirayu Goswami, James Evans, Stephen Peiper
J Pathol Inform 2016, 7:33 (28 July 2016)
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Research Article: Improving the creation and reporting of structured findings during digital pathology review
Ida Cervin, Jesper Molin, Claes Lundstrom
J Pathol Inform 2016, 7:32 (26 July 2016)
DOI:10.4103/2153-3539.186917  PMID:27563491
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Technical Note: NDER: A novel web application using annotated whole slide images for rapid improvements in human pattern recognition
Nicholas P Reder, Daniel Glasser, Suzanne M Dintzis, Mara H Rendi, Rochelle L Garcia, Jonathan C Henriksen, Mark R Kilgore
J Pathol Inform 2016, 7:31 (26 July 2016)
DOI:10.4103/2153-3539.186913  PMID:27563490
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Research Article: Comparing whole slide digital images versus traditional glass slides in the detection of common microscopic features seen in dermatitis
Nikki S Vyas, Michael Markow, Carlos Prieto-Granada, Sudeep Gaudi, Leslie Turner, Paul Rodriguez-Waitkus, Jane L Messina, Drazen M Jukic
J Pathol Inform 2016, 7:30 (26 July 2016)
DOI:10.4103/2153-3539.186909  PMID:27563489
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Original Article: Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases Highly accessed article
Andrew Janowczyk, Anant Madabhushi
J Pathol Inform 2016, 7:29 (26 July 2016)
DOI:10.4103/2153-3539.186902  PMID:27563488
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Original Article: Clinically-inspired automatic classification of ovarian carcinoma subtypes
Aicha BenTaieb, Masoud S Nosrati, Hector Li-Chang, David Huntsman, Ghassan Hamarneh
J Pathol Inform 2016, 7:28 (26 July 2016)
DOI:10.4103/2153-3539.186899  PMID:27563487
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Research Article: Pathology informatics essentials for residents: A flexible informatics curriculum linked to accreditation council for graduate medical education milestones
Walter H Henricks, Donald S Karcher, James H Harrison, John H Sinard, Michael W Riben, Philip J Boyer, Sue Plath, Arlene Thompson, Liron Pantanowitz
J Pathol Inform 2016, 7:27 (6 July 2016)
DOI:10.4103/2153-3539.185673  PMID:27563486
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Original Article: Evaluation of panoramic digital images using Panoptiq for frozen section diagnosis
Dinesh Pradhan, Sara E Monaco, Anil V Parwani, Ishtiaque Ahmed, Jon Duboy, Liron Pantanowitz
J Pathol Inform 2016, 7:26 (4 May 2016)
DOI:10.4103/2153-3539.181770  PMID:27217976
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Research Article: Pitfalls in the use of whole slide imaging for the diagnosis of central nervous system tumors: A pilot study in surgical neuropathology
Melike Pekmezci, Sanem Pinar Uysal, Yelda Orhan, Tarik Tihan, Han Sung Lee
J Pathol Inform 2016, 7:25 (4 May 2016)
DOI:10.4103/2153-3539.181769  PMID:27217975
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Technical Note: A real-time dashboard for managing pathology processes
Fawaz Halwani, Wei Chen Li, Diponkar Banerjee, Lysanne Lessard, Daniel Amyot, Wojtek Michalowski, Randy Giffen
J Pathol Inform 2016, 7:24 (4 May 2016)
DOI:10.4103/2153-3539.181768  PMID:27217974
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Original Article: Digital pathology and anatomic pathology laboratory information system integration to support digital pathology sign-out
Huazhang Guo, Joe Birsa, Navid Farahani, Douglas J Hartman, Anthony Piccoli, Matthew O'Leary, Jeffrey McHugh, Mark Nyman, Curtis Stratman, Vanja Kvarnstrom, Samuel Yousem, Liron Pantanowitz
J Pathol Inform 2016, 7:23 (4 May 2016)
DOI:10.4103/2153-3539.181767  PMID:27217973
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Original Article: Exploring virtual reality technology and the Oculus Rift for the examination of digital pathology slides Highly accessed article
Navid Farahani, Robert Post, Jon Duboy, Ishtiaque Ahmed, Brian J Kolowitz, Teppituk Krinchai, Sara E Monaco, Jeffrey L Fine, Douglas J Hartman, Liron Pantanowitz
J Pathol Inform 2016, 7:22 (4 May 2016)
DOI:10.4103/2153-3539.181766  PMID:27217972
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Research Article: Removing defocused objects from single focal plane scans of cytological slides
David Friedrich, Alfred Böcking, Dietrich Meyer-Ebrecht, Dorit Merhof
J Pathol Inform 2016, 7:21 (4 May 2016)
DOI:10.4103/2153-3539.181765  PMID:27217971
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Original Article: Validation of break-apart and fusion MYC probes using a digital fluorescence in situ hybridization capture and imaging system
Michael Liew, Leslie Rowe, Parker W Clement, Rodney R Miles, Mohamed E Salama
J Pathol Inform 2016, 7:20 (4 May 2016)
DOI:10.4103/2153-3539.181764  PMID:27217970
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Commentary: Commentary: Has pathology gone to the "birds" because we have just been "winging" it?
Liron Pantanowitz, Eric Glassy
J Pathol Inform 2016, 7:19 (4 May 2016)
DOI:10.4103/2153-3539.181763  PMID:27217969
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Editorial: An industry perspective: An update on the adoption of whole slide imaging
Michael C Montalto
J Pathol Inform 2016, 7:18 (11 April 2016)
DOI:10.4103/2153-3539.180014  PMID:27141323
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Research Article: Empirical comparison of color normalization methods for epithelial-stromal classification in H and E images
Amit Sethi, Lingdao Sha, Abhishek Ramnath Vahadane, Ryan J Deaton, Neeraj Kumar, Virgilia Macias, Peter H Gann
J Pathol Inform 2016, 7:17 (11 April 2016)
DOI:10.4103/2153-3539.179984  PMID:27141322
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Book Review: Review of "Practical Informatics for Cytopathology"
George G Birdsong
J Pathol Inform 2016, 7:16 (11 April 2016)
DOI:10.4103/2153-3539.179909  
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Research Article: Quantitative analysis of myocardial tissue with digital autofluorescence microscopy
Thomas Jensen, Henrik Holten-Rossing, Ida M H Svendsen, Christina Jacobsen, Ben Vainer
J Pathol Inform 2016, 7:15 (11 April 2016)
DOI:10.4103/2153-3539.179908  PMID:27141321
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Original Article: Perceptions of pathology informatics by non-informaticist pathologists and trainees
Addie Walker, Christopher Garcia, Jason M Baron, Thomas M Gudewicz, John R Gilbertson, Walter H Henricks, Roy E Lee
J Pathol Inform 2016, 7:14 (11 April 2016)
DOI:10.4103/2153-3539.179904  PMID:27141320
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Technical Note: Pathology interface for the molecular analysis of tissue by mass spectrometry
Jeremy L Norris, Tina Tsui, Danielle B Gutierrez, Richard M Caprioli
J Pathol Inform 2016, 7:13 (11 April 2016)
DOI:10.4103/2153-3539.179903  PMID:27141319
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Symposium: Summary of third Nordic symposium on digital pathology
Claes Lundstrom, Marie Waltersson, Anders Persson, Darren Treanor
J Pathol Inform 2016, 7:12 (11 April 2016)
DOI:10.4103/2153-3539.179902  PMID:27141318
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Research Article: Consultation on urological specimens from referred cancer patients using real-time digital microscopy: Optimizing the workflow
Henrik Holten-Rossing, Lise Grupe Larsen, Birgitte Grønkær Toft, Anand Loya, Ben Vainer
J Pathol Inform 2016, 7:11 (1 March 2016)
DOI:10.4103/2153-3539.177689  PMID:27076989
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Original Article: Comparison of the diagnostic utility of digital pathology systems for telemicrobiology
Daniel D Rhoads, Nadia F Habib-Bein, Rahman S Hariri, Douglas J Hartman, Sara E Monaco, Andrew Lesniak, Jon Duboy, Mohamed El-Sayed Salama, Liron Pantanowitz
J Pathol Inform 2016, 7:10 (1 March 2016)
DOI:10.4103/2153-3539.177687  PMID:27076988
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Commentary: Commentary: Can pathologists interpret digital images as well as they interpret microscope slides?
Thomas W Bauer
J Pathol Inform 2016, 7:9 (1 March 2016)
DOI:10.4103/2153-3539.177683  PMID:27076987
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Original Article: Utilization of virtual microscopy in cytotechnology educational programs in the United States
Maheswari S Mukherjee, Amber D Donnelly, Vincent J DeAgano, Elizabeth R Lyden, Stanley J Radio
J Pathol Inform 2016, 7:8 (1 March 2016)
DOI:10.4103/2153-3539.177682  PMID:27076986
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Technical Note: Implementation of Epic Beaker Clinical Pathology at an academic medical center Highly accessed article
Matthew D Krasowski, Joseph D Wilford, Wanita Howard, Susan K Dane, Scott R Davis, Nitin J Karandikar, John L Blau, Bradley A Ford
J Pathol Inform 2016, 7:7 (5 February 2016)
DOI:10.4103/2153-3539.175798  PMID:26955505
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Review Article: Data security in genomics: A review of Australian privacy requirements and their relation to cryptography in data storage Highly accessed article
Arran Schlosberg
J Pathol Inform 2016, 7:6 (5 February 2016)
DOI:10.4103/2153-3539.175793  PMID:26955504
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Research Article: Feature-based analysis of mouse prostatic intraepithelial neoplasia in histological tissue sections
Pekka Ruusuvuori, Mira Valkonen, Matti Nykter, Tapio Visakorpi, Leena Latonen
J Pathol Inform 2016, 7:5 (29 January 2016)
DOI:10.4103/2153-3539.175378  PMID:26955503
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Original Article: Diagnostic time in digital pathology: A comparative study on 400 cases
Aleksandar Vodovnik
J Pathol Inform 2016, 7:4 (29 January 2016)
DOI:10.4103/2153-3539.175377  PMID:26955502
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Technical Note: Oxygen supply maps for hypoxic microenvironment visualization in prostate cancer
Niels J Rupp, Peter J Schuffler, Qing Zhong, Florian Falkner, Markus Rechsteiner, Jan H Ruschoff, Christian Fankhauser, Matthias Drach, Remo Largo, Mathias Tremp, Cedric Poyet, Tullio Sulser, Glen Kristiansen, Holger Moch, Joachim Buhmann, Michael Muntener, Peter J Wild
J Pathol Inform 2016, 7:3 (29 January 2016)
DOI:10.4103/2153-3539.175376  PMID:26955501
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Editorial: How can we improve Science, Technology, Engineering, and Math education to encourage careers in Biomedical and Pathology Informatics?
Rahul Uppal, Gunasheil Mandava, Katrina M Romagnoli, Andrew J King, Amie J Draper, Adam L Handen, Arielle M Fisher, Michael J Becich, Joyeeta Dutta-Moscato
J Pathol Inform 2016, 7:2 (29 January 2016)
DOI:10.4103/2153-3539.175375  PMID:26955500
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Research Article: Quantitative nucleic features are effective for discrimination of intraductal proliferative lesions of the breast
Masatoshi Yamada, Akira Saito, Yoichiro Yamamoto, Eric Cosatto, Atsushi Kurata, Toshitaka Nagao, Ayako Tateishi, Masahiko Kuroda
J Pathol Inform 2016, 7:1 (29 January 2016)
DOI:10.4103/2153-3539.175380  PMID:26955499
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